Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs9321369 chr6:133086367 C/T 4.12E-11 503 24.93 33.27 31.5 KM Plot
THCA rs9321370 chr6:133117357 A/G 4.54E-9 500 31.47 34.45 23.53 KM Plot
THCA rs9321375 chr6:133144449 T/C 0 503 31.43 35.6 8.1 KM Plot
THCA rs9326087 chr1:41504195 G/T 1.22E-7 502 27.33 30.48 31.92 KM Plot
THCA rs934882 chr2:181339431 A/G 0.000148 503 31.47 31.03 32.9 KM Plot
THCA rs9366009 chr6:166787434 T/G 0.000103 502 33.27 32.03 31.42 KM Plot
THCA rs940285 chr3:97005887 A/G 5.52E-6 501 31.47 32.82 41.97 KM Plot
THCA rs9439035 chr1:41540265 T/C 1.2E-7 502 27.33 30.43 31.93 KM Plot
THCA rs9483501 chr6:133127473 C/T 0 502 31.47 35.2 29.05 KM Plot
THCA rs9483502 chr6:133128222 C/T 0 502 31.47 35.2 29.05 KM Plot
THCA rs9483514 chr6:133228716 G/A 5.37E-9 499 31.45 32.1 30.53 KM Plot
THCA rs9493435 chr6:133088205 A/G 5.44E-12 503 31.53 32.43 30.53 KM Plot
THCA rs9493436 chr6:133088275 T/C 6.67E-12 502 31.53 32.85 30.53 KM Plot
THCA rs9493437 chr6:133088405 A/T 2.24E-13 501 31.6 32.85 30.53 KM Plot
THCA rs9493444 chr6:133125320 C/G 1.15E-6 501 31.47 32.43 30.78 KM Plot